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Genome editing technology can make specifically target genomic modifications, resulting in site specific DNA insertion, deletion or replacement in the genome of an organism. We have recently produced genetically engineered (GE) Meishan pigs containing a ZFN-edited myostatin (MSTN) loss-of-function mutation that leads to a clear "double muscle" phenotype as observed for Belgian cattle. In this study, whole genome resequencing was used as an approach to evaluate the safety risk, if any, associated with the introduction of a ZFN-edited myostatin (MSTN) loss-of-function mutation in a local pig breed, the Meishan pigs. The results of resequencing analyses show that the effective data from pigs of wild-type group and MSTN-edited GE group is greater than 99%. The 1× coverage rate is > 98%, and the 4× coverage rate is > 96%. The genetic variation on each chromosome is close to 1. From this whole genome resequencing study, our results demonstrated that 99.7% of single nucleotide polymorphisms (SNPs) are the same in the same genetic variation from both wild-type group and MSTN-edited GE group, implying genomic sequence variations are highly similar between the two groups of pigs.

In the last decade, the pig sector in Slovakia has been changing continuously, especially in regard to the proportion of pigs coming from foreign breeding programs. These changes lead to changes in carcass characteristics and to a change in the distribution of carcasses within the classes of the Union scale for the classification of pig carcasses. Therefore, this study was undertaken to analyse the actual state of pig carcass classification in the Slovak Republic and to investigate the needs of updating the equations for the classification methods and possible steps to improve the quality of pork produced within the country. Results showed that an increased number of pig carcasses originated from Danish breeding program, and also from the Czech Republic and Poland. When compared to carcasses in 2009, these changes resulted in lower backfat thickness and higher muscle thickness of the longissimus dorsi muscle and thus higher lean meat content of carcasses. This results in a higher number of carcasses classified in the S and E classes. Slight differences between two instrumental classification methods were calculated. The study showed the need for updating the equations for classification methods, and also suggested possible further steps in order to improve the quality of pork.

l-Carnitine, a key element in fatty acid metabolism and energy production, is biosynthesized from gamma-butyro-betaine by the catalysis of gamma-butyrobetaine hydroxylase (BBOX1). We cloned three different 3'untranslated regions (3'UTRs) alternative polyadenylation (APA) transcripts of the BBOX1 gene with different 3'UTR length (GenBank Accession Nos. KX431577, KX431578, KX431579). Two polymorphisms, NM_001101881.2: g.1797_1798insTGC and g.1935T>C, were revealed in 3'UTR of BBOX1 gene. They created or disrupted a restriction site for endonuclease BbvI and HincII, respectively. Moreover, the single nucleotide polymorphism (SNP) g.1935T>C can create or disrupt polyadenylation signals PAS3 resulting in the presence of APA3 transcript variant. Marker-trait association analyses showed that the BBOX1-BbvI and BBOX1-HincII loci were significantly associated with muscle fibre diameter, shear force, net meat weight, and carcass weight (P < 0.01). Moreover, we also found a significant association of combined genotypes with cooking loss, muscle fibre diameter, shear force, net meat weight, and carcass weight (P < 0.01). The results of this study provide the evidence that polymorphisms in BBOX1 gene are associated with meat quality and carcass traits in Chinese Red cattle, and may be used as a candidate for marker assisted selection in beef cattle breeding program.

Major genes could be introgressed into laying hens to attenuate heat stress. However, under cold and/or moderate ambient temperature, these genes might possess different behaviour. The main objective of this study was to evaluate laying performance, immune response, and antioxidant status of native laying hens segregating for naked neck (Na) and frizzle (F) genes under low ambient temperature. Five genotypes were studied: homozygous naked neck (NaNaff), heterozygous naked neck (Nanaff), homozygous frizzle (nanaFF), heterozygous frizzle (nanaFf), and normally feathered (nanaff). The hens were raised under temperature range 22.2-16.7°C. No adverse effect due to ambient temperature was detected in laying performance for naked neck genotypes. Significant decrease in egg weight was recorded in nanaFF genotype compared to the other genotypes leading to significant decrease in egg mass. Significant improvement in shell thickness was associated with Na and F genes. NaNaff genotype had a significantly higher eggshell strength compared to nanaff. Furthermore, Na and F genes improved cellular mediated immune responsiveness, whereas this improvement did not extend to humoral immunity. Birds carrying F gene in homozygous state had a higher total antioxidant activity compared to the remaining genotypes. It could be concluded that the presence of Na and F genes in laying hens raised under low ambient temperature significantly increased shell thickness and, in turn, improved shell strength. Moreover, they greatly enhanced cellular immunity, particularly in heterozygous naked neck status.

This study aimed to evaluate the impact of selection on the genome structure of beef cattle through identification of selection signatures reflecting the breeding standard of each breed and to discover potential functional genetic variants to improve performance traits. Genotyping data of six beef breeds (Aberdeen Angus, Hereford, Limousin, Charolais, Piedmontese and Romagnola) were used to perform genome-wide scans for selection signatures. The approaches applied were based on an assumption that selection leads to linkage disequilibrium or to a decrease of genetic variability in genomic regions containing genotypes connected with favourable phenotypes. Thus, the selection signatures were analysed based on Wright's F_ST index, distribution of runs of homozygosity segments in the beef genome and determination of linkage disequilibrium variability between breeds. The number and length of detected selection signals were different depending on the breeds and methodological approaches. As expected due to the breeding goals of analysed breeds, common signals were located on autosomes 2, 6, 7, 13 and 20 close to the genes associated with coat colour (KIT, KDR), muscle development (GDF9, GHRH, GHR), double muscling (MSTN), meat tenderness (CAST) and intramuscular fat content (SCD). But, across the genomes of analysed breeds, unique selection signals were found as well. The subsequent analysis of those single nucleotide polymorphism markers can be beneficial for the genetic progress of studied breeds in future.

The objectives were to determine the effects of insemination with sexed semen at spontaneous and induced estrus, fixed-time insemination at synchronized estrus, the deposition site, estrous intensity, housing, age, body weight, and bull on the pregnancy rate in Holstein heifers, and to compare the quality traits of sexed sperm with those of unsexed semen. The study was conducted on 3206 heifers, housed in three free-stall barns and in four tie-stall facilities. After synchronization by two prostaglandin F2α (PGF2α) treatments 14 days apart, 281 heifers were inseminated conventionally and 118 intracornually with sexed semen, and 532 and 148 heifers, respectively, with unsexed semen 80-82 h after the second treatment. At spontaneous estrus, 1129 heifers were inseminated with sexed and 529 with unsexed semen, and at estrus induced by a single PGF2α treatment 185 heifers were inseminated with sexed and 284 with unsexed semen. Heifers were inseminated conventionally with sexed semen 12 h after detection of estrus, and with unsexed semen according to the a.m.-p.m rule. Sexed and unsexed semen doses from five bulls were evaluated for motility, morphology, membrane integrity, and chromatin stability. Overall pregnancy rate with sexed semen (41.7%) was 80.8% of that with unsexed semen (51.6%) and was lower than with unsexed semen irrespective of the type and intensity of estrus, and deposition site. Insemination at spontaneous estrus resulted in a higher pregnancy rate (53.4%) than at induced (41.9%) or synchronized (44.7%) estrus. Pregnancy rates did not differ after intracornual (44.9%) or conventional insemination (48.4%). Strong estrus resulted in higher pregnancy rate (by 14.4% points) compared to weak estrus. The type of housing, age, and weight of heifers had no effect irrespective of the type of semen. The total, progressive and linear motility, and membrane integrity were lower and proportions of immotile sperm greater, for sexed than for unsexed semen.

The aim of the study was to characterize nucleotide sequence polymorphisms in the bovine PTPRQ gene, to search for their possible effect on the expression of myogenic factor 6 (MYF6; MRF4) and myogenic factor 5 (MYF5) genes in skeletal muscle and on meat production traits. Three novel SNPs were found in intron 35 of the bovine PTPRQ gene: g.200,451A>G, g.200,467T>C, g.200,480C>T (GenBank Acc. No. NW_001494990.2; counted from translation initiation site). These SNPs are placed very closely to each other (within 29 base pairs). The results showed that genotype influenced the expression of MYF6 and MYF5 genes in longissimus dorsi muscle of Limousine bulls both at the transcript and protein levels. Moreover, an association was found between the PTPRQ genotype and carcass traits in Limousine bulls. These findings suggest that bovine PTPRQ gene may contain regulatory sequences for MRF genes located 24 kb downstream. The results also showed that nucleotide sequence polymorphisms in the PTPRQ gene may influence meat production traits in beef cattle, possibly through the regulation of the MRF genes expression.

Lamb growth performance traits in relation to parental breeding values (BVs) for these traits were evaluated in a purebred Suffolk sheep population in the Czech Republic. The research lasted over 8 years and included 24 886 lambs. Four relevant parental BVs were observed: BV predicted for lamb live weight direct effect (BVLW-DE), BV predicted for lamb live weight maternal effect (BVLW-ME), BV predicted for lamb musculus longissimus lumborum et thoracis depth (BV-MLLT), and BV predicted for lamb backfat thickness (BV-BT). The lamb live weight (LW; kg), musculus longissimus lumborum et thoracis depth (MLLT; mm), and backfat thickness (BT; mm) were assessed at 100 days of age. A dataset was created using the most current parental BVs for each year (2007-2014) and subsequent growth traits of their lambs in the next season (2008-2015). Linear regressions showed an increased tendency when one point in dam BVs was associated with an increase in lamb LW (0.393 kg; P < 0.01 in BVLW-DE and 0.090 kg; P < 0.05 in BVLW-ME), MLLT (0.340 mm; P < 0.01 in BV-MLLT), or BT (0.243; P < 0.01 mm in BV-BT). Lower (but significant - P < 0.01) values on linear regression were detected for sire BVs, when 0.135 kg of LW, 0.217 mm of MLLT, and 0.214 mm of BT corresponded to 1-point increases of BVLW-DE, BV-MLLT, or BV-BT. This was confirmed by ANOVA evaluation, especially for LW and MLLT traits. Maximal differences (P < 0.05) in lamb LW were 1.84 kg or 0.88 kg regarding to dam or sire BVLW-DE groups. Similarly, the difference (P < 0.05) in lamb MLLT reached 0.82 mm in dam BV-MLLT, while 0.57 mm was detected in sire BV-MLLT groups. These results have practical implications for the objectives of selection schemes used in the Suffolk sheep population in the Czech Republic.

While it is known that heat treatment of cereal grains generally improves the nutritional value for ruminants, simultaneous information on rumen degradability and intestinal digestibility of the rumen by-pass is scarce, especially for non-starch constituents. The effect of steam flaking at 90°C for 30 min on protein quality of maize, wheat, and barley was studied. In addition to proximal chemical analyses, protein rumen degradability was determined in vitro and intestinal digestibility of rumen undegraded protein was determined using the mobile bag method. No significant effects of steam flaking on chemical composition of cereal grains (crude protein, acid detergent fibre, neutral detergent fibre, and starch) were observed. The protein fractions that are relevant to rumen degradability were significantly influenced by the steam flaking: the non-protein nitrogen fraction (A) was reduced (P < 0.05) by 43-93% for all three cereal grains, whereas the fraction that represents true soluble protein (B1) was reduced (P < 0.05) for wheat grains (by 77%) and barley (by 93%). Although the difference was not significant, a decrease of 41% for B1 fraction was also observed for maize. On the other hand, steam flaking markedly increased buffer insoluble but neutral detergent soluble protein fraction (B2) by 15-25% for all three cereal grains, whereas effects on B3 fraction were not significant. Steam flaking was also associated with an increase of the rumen undegradable protein fraction (C) in the case of barley, from 6.6 to 11.1% of total N (P < 0.05) and wheat, from 5.2 to 8.4% of the total N (P < 0.05). Overall, the changes of the protein fractions led to a considerable increase of the rumen undegradable protein (RUP) for all steam-flaked cereal grains (P < 0.05). Steam flaking also increased (P < 0.05) intestinal digestibility of RUP of the cereal grains (by 3.6-34.8%), leading to a more efficient protein use in ruminants.

β-Lactoglobulin (β-LG) is the dominant non-casein whey protein found in milk of bovine and of most ruminants. The amino acid sequence of β-LG along with its 3-dimensional structure illustrates linkage with the lipocalin superfamily. Preliminary studies in goats indicated that milk yield can be influenced by polymorphism in genes coding for whey proteins. The aim of this study is to identify and evaluate the incidence of functional polymorphisms in the exonic and intronic portions of β-LG gene in native Saudi goat breeds (Ardi, Habsi and Harri). Blood samples were collected from 300 animals (100 for each breed) and genomic DNA was extracted using QIAamp DNA extraction kit. A fragment of the β-LG gene from exon 7 to 3' flanking region was amplified with pairs of specific primers. Subsequent digestion with Sac II restriction endonuclease revealed two alleles (A and B) and three different banding patterns or genotypes, i.e. AA, AB, and BB. The statistical analysis showed that β-LG AA genotype had higher milk yield than β-LG AB and β-LG BB genotypes. Nucleotide sequencing of the selected β-LG fragments was done and submitted to GenBank NCBI (Accession Nos. KJ544248, KJ588275, KJ588276, KJ783455, KJ783456, KJ874959, and KP269078). Two already established SNPs in exon 7 (+4601 and +4603) and one fresh SNP in the 3' UTR region were detected in the β-LG fragments with designated AA genotype. The exonic SNPs, i.e. +4601 (G/A) and +4603 (G/C), were found within the Sac II restriction site and accountable for generating the AA genotypic patterns. Hence, the allele characterized by the substitution G>A has been sub-designated as AA^A, while the one characterized by the substitution G>C as AA^C. The polymorphisms in exon 7 did not produce any amino acid substitution.

The Bulgarian Grey Cattle (BGC) and Shorthorn Rhodopean Cattle (SRC) are indigenous breeds from the Balkan Peninsula region. The Balkans, as part of Southeast Europe, is a crucial civilization crossroad of cultures, people, and livestock. This region is considered the civilization "cradle" of prehistoric times (around 6500 BC). The aim of the present study is to reveal the genetic profile and population structure of BGC and SRC according to displacement loop control region. The results showed that these ancient cattle breeds belong to the common T1, T2, and T3 haplogroups. Within the BGC population the T3a sub-haplogroup was predominant (about 80% - 31/39) with haplotypes BGC-4.1 (33% - 13/39) and BGC-4.2 (about 40% - 16/39). Mitochondrial DNA analysis of SRC population showed a heterogeneous structure consisting of five basic haplo- and sub-haplogroups, all based on twelve haplotypes with equal frequencies. Based on 173G polymorphic site newly named sub-haplogroup T3c was proposed. A detailed comparative analysis with other Balkan cattle populations was performed. Data showed multiple haplotype mtDNA profile with no phylogenetic relationships within.

Milk electrical conductivity is employed for mastitis detection in cows due to its automation, low cost, and infection detectability at early stage. Nevertheless, the number of publications about its use in dairy goats is scarce. The aim of this study was to check and compare the detectability of goat mastitis (sensitivity and specificity) using different algorithms, constructed with individual daily conductivity data from glands, in order to improve the know how about the potential of this variable for goat mastitis detection. A total of 18 goats (8 primiparous and 10 multiparous) free of mastitis were used, and gland milk conductivity was daily monitored. After 16 days of monitoring, some unfavourable situations for gland health were simulated in order to increase the cases of infection. Once infection was established (9 goats and 12 glands got infected), the experiment continued for further 16 days. A total of 19 different algorithms that employed conductivity data from gland were designed; they were tested using gland milk conductivity (EC) and ratio of EC of collateral glands in the same goat (RAT_EC). The algorithms were tested in all the animals and intramammary infection detection ability characteristics (sensitivity (SENS), specificity (SPEC), positive predictive value (PPV), and negative predictive value (NPV)) were recorded. All clinical cases were detected (n = 2, 100% SENS) with all the algorithms. Best global SENS (clinical and subclinical, 33.3-58.3%) and SPEC (77.8-100%) were similar to results reported in previous studies in cows, and obtained with algorithms ARIMA and Rule 1 (3 standard deviations of data). The best algorithms to use in mastitis detection depend on the prevalence and type of mastitis. EC ARIMA and Rule 1 algorithms detected the most severe cases on-line and quickly, with a low proportion of false positives.

Eggshell quality is one of the most significant factors affecting poultry industry; it economically influences egg production and hatchability. Eggshell consists of shell membranes and the true shell that includes mammillary layer, palisade layer, and cuticle. Measurements of eggshell quality include eggshell weight, shell percentage, breaking strength, thickness, and density. Mainly eggshell thickness and strength are affected by the time of egg components passage through the shell gland (uterus), eggshell ultra-structure (deposition of major units), and micro-structure (crystals size and orientation). Shell quality is affected by several internal and external factors. Major factors determining the quality or structure of eggshell are oviposition time, age, genotype, and housing system. Eggshell quality can be improved through optimization of genotype, housing system, and mineral nutrition.

CpG islands (CGIs) are an important group of CpG dinucleotides in the guanine- and cytosine-rich regions as they harbour functionally relevant epigenetic loci for whole genome studies. As a matter of fact, since there has not been a formal comparative analysis of CGIs in domestic even-toed ungulate genomes, this study was performed to serve this comparison. The Hidden Markov Model was used to detect CGIs in the genomes. The results indicated that the CGIs number and CGI densities had scant variations across genomes. The goat genome had the highest number of CGIs (99 070), whereas the alpaca genome had the highest CGI density (43.39 CGIs/Mb). Significant positive correlations were observed among CGI densities with chromosome pair number, observed CpG/expected CpG, recombination rate, and gene density. When the size of chromosomes increased, the CGI densities decreased and a trend of higher CGI densities in the telomeric regions was observed. Only 10.96% of CGIs were methylated underscoring this postulation that the majority of CGIs remains to be unmethylated. The highest amount of the methylated CGIs was observed in the introns, intergenic, and coding (CDS) regions and the lowest amount of the methylated CGIs was observed in the promoter regions, implying that the DNA methylation of CGIs may control gene expression at the genome level. Detected differences between even-toed ungulate and other vertebrate genomes showed that CGI densities varied greatly among the genomes. These findings would contribute to better understanding the even-toed ungulate (epi) genomes, the role of CGIs in epigenomic functions and molecular evolution.

Breeding of hybrids between wild boars and domestic pigs is in the consumer interest because of the need to ensure food security and diversification via widening the genetic basis of animals reared for meat. To expand the knowledge about their nutritional requirements, this study aimed to investigate hindgut fermentation in these animals. Caecal and colon cultures were incubated for 12 h in vitro with or without wheat bran as a supplementary substrate. Short-chain fatty acids, ammonia, methane, and total gas production were determined. The total concentrations of short-chain fatty acids in unincubated caecal and colon samples were 93.1 and 115 mmol/kg, respectively. The short-chain fatty acid profile in fresh hindgut contents was characterized by a high molar proportion of acetate (74.8-75.0 mol%), followed by propionate (18.2-18.5 mol%) and butyrate (5.4-5.5 mol%). The presence of wheat bran lowered acetate and increased butyrate, propionate, and valerate molar proportions. The ammonia level remained low (1.3-2.43 mmol/kg) regardless of the addition of the substrate. The relatively low pH and ammonia concentration in wild boar/pig hybrids may be caused by the low level of crude protein in diet of these animals. The rate of methanogenesis increased during the fermentation simultaneously with an increase in the production of gases after wheat bran addition. Methane production in the caecal and colon samples incubated with the substrate reached 15.6 and 16.1 mmol/kg, respectively. The hindgut fermentation pattern in wild boar/pig hybrids generally resembled that described earlier in domestic pigs, although some observed dissimilarities may be caused by distinct microbial activity.

In order to improve the gut microbiome of calves, probiotic bacteria can be fed as active living-cells (fermented milk), or as live but inactive (freeze-dried) cultures. Ten bifidobacterial strains with suitable probiotic properties (as determined in our previous study) were tested for survival during the freeze-drying process, and screened for their ability to ferment cow's milk. The viability of both freeze-dried and live-cell cultures during storage was also tested. All of the strains tested were able to ferment cow's milk, with average counts of 8.26 ± 0.62 log CFU/ml. Eight out of the ten strains were able to survive in milk for 2 months in counts higher than 10⁶ CFU/ml. Bifidobacteria showed high viability following the freeze-drying process, with average numbers of 9.03 ± 0.22 log CFU/vial and did not decrease after 12 months of storage. The mixture of rifampicin-resistant variants of bifidobacteria (RRBs) was fed to 2-day-old dairy Charolais calves in the form of living-cells, or as freeze-dried bacteria. The control group was given no probiotics. Survival of the RRBs administered and the numbers of other bacterial groups in faecal samples was monitored by culturing. Bifidobacteria that were administered passed successfully through the upper parts of the gastrointestinal tract, and were found in numbers higher than 10⁹ CFU/g for two weeks. RRBs colonized the intestines of calves for at least 63 days in both treatment groups. Significantly higher total counts of bifidobacteria were found in the treated groups, compared to the control group. Reduction in Escherichia coli and total coliforms numbers, and an increase in lactobacilli counts were observed in both experimental groups following the application of the probiotic mixtures. Our results show that both forms of administering probiotic bifidobacteria to calves are effective, but that the freeze-dried form is more suitable from a practical viewpoint.

The aim of the present study was to investigate the associations of single nucleotide polymorphisms (SNPs) in candidate genes with fatness traits in the Longissimus dorsi muscle of pigs. The polymorphisms of genes were investigated, which included beta-3-adrenergic receptor gene (ADRB3), heart fatty acid-binding protein gene (FABP3), and hormone-sensitive lipase gene (LIPE) as well as lipoprotein lipase gene (LPL). The intramuscular fat (IMF) content and fatty acid composition contents in Longissimus dorsi muscle samples were measured. Results showed that ADRB3, LIPE, and LPL SNPs were associated with IMF content (P < 0.05). ADRB3 AG heterozygotes exhibited higher IMF content. LIPE A allele was associated with greater IMF content. LPL CT heterozygotes exhibited the lowest IMF content. ADRB3 c.1192G>A had highly significant association with the total monounsaturated fatty acid (MUFA) (P < 0.01) and the total polyunsaturated fatty acid (PUFA) (P < 0.01). LIPE c.442G>A was significantly associated with the contents of C12:0 and C14:0 (P < 0.05). LPL c.624C>T was significantly associated with the percentage of C16:1 (P < 0.05) and the percentage of total saturated fatty acid (SFA) (P < 0.05). The pigs with ADRB3 G allele had more MUFA, and the pigs with LPL T allele had less SFA, implying that the ADRB3 G and LPL T in pigs may be beneficial to human health. In conclusion, the results suggest that these genetic markers are important sources of the variations for the pork selection to obtain favourable meat with higher IMF levels and appropriate fatty acid composition.

The ribosomal protein SA (RPSA), also known as 37-kDa laminin receptor precursor/67-kDa laminin receptor (LRP/LR), has been identified as a multifunctional protein, playing an important role in multiple pathologies like cancer and prion diseases. Since RPSA is involved in the binding and internalization of the prion protein, mutations in the ovine RPSA gene, influencing the RPSA-PrP^C/PrP^Sc binding, can potentially play a part in the resistance to prion diseases. Our goal was to further characterize the complex RPSA gene family and to detect structural mutations which can play a role in this disease. In a prior study, 11 ovine pseudogenes were detected experimentally. As the whole genome shotgun ovine genome became accessible, an in silico genome-wide screening was performed and 37 new pseudogenes (36 processed and one semi-processed pseudogene) were detected, bringing the total to 48 ovine RPSA pseudogenes. Additionally, the complete bovine genome was screened in silico and 56 pseudogenes were identified. Once these sequences were known, it was possible to analyze the presence of mutations in the coding sequence and exon-flanking regions of the ovine functional full-length RPSA gene without the interference of pseudogenic sequences. Nineteen mutations were found: one in the 5' UTR, a silent one in the coding region, and seventeen in the exon-flanking regions, including an interesting mutation in the SNORA62 gene, localized in intron 4 of RPSA, leading to potential ribosomal defects. Structural mutations of the RPSA gene can be ruled out to play a role in transmissible spongiform encephalopathies but regulatory mutations still can have an effect on these diseases.

Statistical methods of imputation allow predicting genotypes of markers (which were not genotyped in the whole population) based on known linkage disequilibrium relationships between the flanking polymorphisms and the information obtained from reference datasets used as a pattern. In this study we attempted to predict genotypes of two bovine spongiform encephalopathy (BSE) susceptibility associated indel polymorphisms located in the promoter region of PRNP gene relying on the data obtained from middle density SNPs arrays in a sample of the population of Holstein cattle. The two SNPs panels spanning PRNP locus were tested in terms of imputation efficiency. Both panels gave satisfactory imputation results showing high accuracy and high probabilities of imputed genotypes. Our results suggest that the approach applied can be used to evaluate the frequency of the disease associated polymorphisms in large populations of animals genotyped with whole-genome SNPs panels based on a limited-size reference population and small financial outlays.

Thirty-nine multiparous ewes (19 Pelibuey and 20 Romanov × Pelibuey) treated with fluorogestone acetate impregnated intravaginal sponges were used to evaluate the effects of low pregnant mare serum gonadotropin (PMSG) doses and genotype on their reproductive efficiency under heat stress conditions. The sponge treatment lasted for 12 days, and 24 h before sponge removal, ewes of each genotype were injected with 140 or 280 IU of PMSG. Ewes showing estrus were naturally mated twice. Reproductive performance was not affected (P > 0.05) by the dose × genotype interaction. All treated ewes presented estrus signs within a 48-h period after sponge removal. Shorter (P < 0.05) estrus interval and higher (P < 0.05) fecundity were observed in ewes treated with 280 IU of PMSG compared to those treated with 140 IU. Pelibuey ewes exhibited shorter (P < 0.01) estrus interval and greater (P < 0.01) fertility as compared with Romanov × Pelibuey ewes. The response to estrus, gestation length, prolificacy, and percentage of single and multiple lambing were not affected (P > 0.05) by dose or genotype. In conclusion, under heat stress conditions, low PMSG doses as 140 or 280 IU can be used to successfully induce and/or synchronize the estrus in Pelibuey ewes and their crosses with Romanov, regardless of reduced fertility observed in crossed Pelibuey ewes. If a more predictable and compact estrus is required, administration of 280 IU of PMSG is recommended.

The aim of this study was to provide the first account of fish and macroinvertebrate communities in a heavily degraded river basin in the Czech Republic. Fish and macrozoobenthos were surveyed at 18 sites in the Bílina River and 11 sites in tributary streams during June-July 2007. Fish were sampled by electrofishing and macrozoobenthos were collected by kick-sampling using a sweep net. The composition of macroinvertebrate assemblages in headwater and reference sites in the upper Bílina River indicated clean water with saprobic index (SI) 1.31-1.43 followed by a transitional stretch downstream the Kyjická reservoir (SI 2.05-2.32) and dramatic decline of water quality to SI 3.18 in the river stretch downstream of industrial and municipal pollution at Litvínov-Záluží. Despite several minor pollution sources on the subsequent downstream river stretch until its mouth into the Elbe River, the water quality indicators fluctuated in the range of lower betamesosaprobity (SI 2.06-2.58). Species richness and biodiversity indices followed a similar pattern as river saprobity. Twenty-three fish species were documented in the Bílina River basin. Chub (Leuciscus cephalus), gudgeon (Gobio gobio) and roach (Rutilus rutilus) were the most frequent species at the Bílina sites. Chub was the most numerous fish in the tributaries. Fish species richness in the longitudinal profile did not increase downstream in the Bílina mainstem, most likely because the presence of reservoirs and water pollution interrupted the river continuum pattern. Qualitative data on fish assemblages corresponded to the course of environmental stress. A sustainable fish community was documented only in the lowermost site in Ústí nad Labem near the confluence with the Elbe River. The Bílina River tributaries constitute potential refuges for fish in this basin.

The objective of the study was to determine the relationships between age of the goat and faecal egg counts, liver enzymes, and minerals in the wet and dry seasons in male and female Nguni goats of South Africa. Fifty-six female and forty male Nguni goats were used for the study. Faecal and blood samples were collected once in the dry (August) and wet (January) season. Faecal egg counts (FEC) were determined by the modified McMaster technique while trematodes were determined by the sedimentation method. Blood was analyzed for phosphorus, calcium, magnesium, alkaline phosphatase (ALP), alanine transaminase (ALT), creatine kinase (CK), aspartate aminotransferase (AST), and gamma-glutamyltransferase (GGT) levels. Faecal egg counts were significantly higher in the wet compared with the dry season. Most (P < 0.05) of the goats were within the reference values for calcium, phosphorus, and magnesium in both seasons. Phosphorus concentrations were significantly affected by age with higher levels in the young (2.1 ± 0.06) compared to the adult (2.0 ± 0.03) goats. Alkaline phosphate was significantly affected by age with higher levels in young than in mature goats. Higher AST, CK, and GGT concentrations were recorded in the wet compared to the dry season (P < 0.05). Higher CK and AST were recorded in male than in female goats while for ALP, the values were higher in female than in male goats. Linear negative relationships (P < 0.05) existed between age and ALP, phosphorus, and FEC, while quadratic relationships existed between age and strongyles and Strongyloides egg counts. Calcium was linearly related (P < 0.05) to FEC, while CK was related to FEC in a quadratic fashion. Age of the Nguni goats can be used to predict faecal egg counts, phosphorus, and ALP levels.

The purpose of this study was to analyse the microbial diversity in the caecum of geese using a 16S ribosomal RNA gene (rRNA) clone library approach. A total of 160 clones and 124 clones were sequenced and phylogenetically analysed from the contents and mucosa of the caecum of Yang Zhou geese, respectively. The result indicated that there was a rich variety of bacteria in the caecum contents. Forty-six operational taxonomic units (OTUs) based on a 98% similarity criterion were classified in the contents of goose caecum, as compared to 29 OTUs based on a 97% similarity criterion in the mucosa of goose caecum. The sequences were assigned to 7 and 5 groups in the contents and mucosa of goose caecum, respectively. Contents of goose caecum were dominantly occupied by Clostridia-related species (58.7%) with other abundant sequences being related to Bacteroidetes (26.9%) and Erysipelotrichi (11.2%). Gammaproteobacteria (59.6%) and Clostridia (20.1%) were predominant in the mucosa of goose caecum.

In the present study the effect of preventive application of Enterococcus faecium EF 55 on the intestinal mucosa was evaluated in experimentally infected chickens with Salmonella enterica subsp. Enteritidis. A total of 120, one-day-old Salmonella-free chickens of Isa Brown hybrid were divided into 4 groups. The chickens in groups E and ES were perorally inoculated with E. faecium EF55 in a dose of 1 × 109 CFU/ml for 7 consecutive days. Placebo was applied to birds in control group C and group S during the first 7 days of life. At the age of 8 days chickens in groups ES and S were perorally infected with S. enterica subsp. Enteritidis phage type 4 in a dose of 1 × 108 CFU/ml. In birds treated with E. faecium EF 55 (group ES) a decreased number of Salmonella spp. positive individuals was recorded from 28.5% 2 days post infection (p.i.) to 10% 14 days p.i. when the difference between group ES and group with the application of Salmonella Enteritidis alone (group S) was significant (P < 0.01). On the contrary, in birds of group S the percentage of Salmonella spp. positive animals showed no constant changes. It increased from 12.5% 2 days p.i. to 37.5% 4 days p.i. The maximum of positive samples 83.3% was found 14 days p.i. The application of E. faecium EF55 reduced colonisation of caeca and minimized translocation of salmonellae into the liver and spleen. Two days p.i. the shortest villi in the jejunum were observed in group S - 1 266.2 µm, when compared to group E with the highest jejunal villi - 1 605 µm (P < 0.05). The growth of the villi was observed 14 days p.i. in all groups except group S. The early exposition of chickens to E. faecium EF55 led to more rapid development of intestinal villi when compared to the untreated control (P < 0.05). Reduced colonisation of the intestinal tract by salmonellae in birds treated with E. faecium EF 55 also preserved the microenvironment of the intestine from harmful effects of the pathogen.

: Nutrient digestibility and parameters of nutritive value for ruminants of two winter wheat (Triticum aestivum L.) cultivars were evaluated by means of an in vivo balance trial performed by the regression method on two groups of heifers with an increasing proportion of grain in DM (from 6 to 46%). Sulamit and Rapsodia, chosen on the basis of the in vitro test from a set of 25 cultivars (grown in 2002-2004) reached significant differences in DM fermentability in vitro (by 43.7-78.6 ml/g DM, P < 0.05). In vivo digestibility of crude protein, nitrogen-free extract, organic matter, parameters of N retention, energy concentrations (metabolisable energy, net energy for lactation and for fattening) and parameters in the PDI system (especially PDIE) increased along with the grain proportion in the diet. At the comparable proportion of grain in the ration the positive differences were significantly higher (P < 0.05) for Sulamit than Rapsodia.

The goal of this study was to compare the growing degree-days (GDD) and predictive equations for alfalfa quality (PEAQ) for the prediction of lucerne quality and to test their accuracy and suitability in the first cut period in Central Bohemia. Several additional stand parameters were verified in order to increase the accuracy of the quality estimate under these environmental conditions. In 2004-2007, the measurement and sampling were repeatedly realized from the late vegetative to the early bloom stage in six replications. For the GDD model across the years, the obtained R² for NDF, ADF and CP were 0.40, 0.57 and 0.65, respectively. It seems that the forage quality response to accumulated GDD was related to the stand development and it could be the reason for low R² across all the years. For the PEAQ model, R² were 0.62, 0.92, and 0.85, respectively. Similarly like in the GDD model, the effect of stand development across the years on changes in the slopes of equations was observed. The accuracy of the model combination was not higher in comparison with the PEAQ model. The count of stems per plant, density of stems per m², dry matter yield and average stem weight improved the NDF content prediction within a four-year period. In these models, variables which represent the stand development should be taken into account.

Fish fauna and macrozoobenthos were surveyed at 51 and 32 sampling sites, respectively, in mountain and submountain streams of the Vlara stream drainage area in the Bílé Karpaty Mountains. The aim of the study was to bring wide knowledge of their aquatic communities with their indicative value of the ecological quality of particular sites. Fish were sampled by electrofishing and macrozoobenthos was collected by kick-sampling using a bottom net (mesh size 500 μm) at the majority of the respective sites. In total, 15 fish species were registered in all profiles. At four headwater sites no fish were recorded at all. Brown trout (Salmo trutta m. fario) and stone loach (Barbatula barbatula) were the most frequent species at the sites under study (73% and 67%, respectively). A similar frequency (41%) was documented for chub (Leuciscus cephalus), gudgeon (Gobio gobio) and minnow (Phoxinus phoxinus). The species richness increased downstream in the mainstream of the Vlára stream with the maximum of 10 species found at the lowest study site. Qualitative data on fish assemblages did not fully correspond with the environmental stress. On the other hand, macrozoobenthos indicated a minor decrease in water quality downstream of small villages and farms. Larvae of dipterans (Chironomidae and Simuliidae in particular) and mayflies (Ephemeroptera) dominated among the temporary water macroinvertebrates while numerous populations of Gammarus fossarum (Amphipoda) and in some cases also of Asellus aquaticus (Isopoda) were recorded as permanent inhabitants of clean and polluted stretches, respectively.

In addition to the results published in the first communication (Opitz von Boberfeld et al., 2006) this paper presents crude protein, energy (ME) and ergosterol concentrations of autumn saved herbage at different sites in Central Germany, Poland, Hungary and the Czech Republic. Within these sites, the influence of the factors pre-utilisation and winter harvest date was tested over three consecutive years. Related to the different climatic conditions of the sites, crude protein concentrations of the growths pre-utilised in July varied from 149 g/kg in November to 134 g/kg of dry matter (DM) in January. The influence of climatic conditions was different on each location and varied depending on the year. Generally, the consistent effect of the factor "site" related to altitude could not be observed. While the energy concentrations decreased with advancing winter and partly reached the values below 6 MJ ME/kg of DM in January, the ergosterol concentrations increased. The results demonstrate that under Central European conditions autumn saved herbage, pre-utilised in July, could provide adequate quantity and quality for suckler cows until December. Afterwards, the utilisation of preserved forages becomes essential.

The objective of this paper was to obtain information about the effect of interactions and different agronomical measures on autumn saved herbage of different sites in Central Europe (Czech Republic, Germany, Hungary, Poland). Within the different sites, the effect of the factors pre-utilisation (accumulation since June, July or August) and winter harvest date (November, December or January) on dry matter (DM) yield and digestibility of organic matter (DOM) was investigated over three consecutive years. All results were examined by analysis of variance and least-significance differences (LSD) were calculated (with P < 0.05). For all years, date of winter harvest was the most important source of variance. The highest yields were attained in November (varied from 2.3 to 0.8 t/ha), the lowest in January (from 1.5 to < 0.2 t/ha). The highest DOM concentration (from 70.4 to 52.4% of dry matter) was reached in November, and it decreased until January (from 59.6 to 35.2% of dry matter). Predominantly caused by the prevailing climatic conditions, the DM yields of the sites varied considerably during winter, showing a significance for the interaction winter harvest date × site as well as for the factor site. The utilisation of autumn saved herbage, pre-utilised in July, might be the best opportunity providing an adequate quantity and DOM for suckler cows until the end of the year, but the prevailing climatic conditions at different sites inCentral Europe finally decide on the practicability of winter grazing.

In an experiment with 45 neonatal male Holstein calves, effects of yeast cultures Yea-Sacc^® 1026 (SC) containing Saccharomyces cerevisiae (strain 1026) and Vitex (KF) containing Kluyveromyces fragilis (strain Jürgensen) on rumen fermentation characteristics were determined. From day 4 to day 56 of age, the calves were allocated to one of the three dietary treatments (Control, SC, and KF) of 15 animals each, placed in individual pens, and fed 4 l of whole milk twice daily and a basal concentrate mixture ad libitum as calf starter feeds. The control treatment was not supplemented with yeast culture. The yeast culture supplements Yea-Sacc^® 1026 and Vitex were top-dressed at 10 g/calf daily on the basal concentrate mixture of treatments SC and KF, respectively. At the end of the experiment (day 56), all calves were slaughtered and the rumen fluid was analysed. The administration of yeast cultures Yea-Sacc^®026 and Vitex to calves did not affect final body weight (BW), BW gain, dry matter intake, feed conversion ratio, ruminal pH, lactic acid concentration and the molar proportion of propionic acid, but it decreased (P < 0.05) the total volatile fatty acid concentration and the molar proportion of butyric acid, and increased (P < 0.05) the molar proportion of acetic acid and the acetate to propionate ratio. In addition, the microbial cellulolytic activity was higher in calves that received both yeast cultures compared to the control treatment. The results of this study suggest that the ruminal fermentation was more stable in calves receiving yeast culture supplements.